cv19gm package

Subpackages

• cv19gm.data package
  • Submodules
  • cv19gm.data.cv19data module
    • ImportData
      • ImportData.add_data()
      • ImportData.imp_adj_matrix_national()
      • ImportData.imp_adj_matrix_regional()
      • ImportData.imp_deaths_accumulated()
      • ImportData.imp_deaths_deis()
      • ImportData.imp_deaths_deis_mcyt()
      • ImportData.imp_deaths_excess()
      • ImportData.imp_hosp_icu()
      • ImportData.imp_hosp_icu_mcyt()
      • ImportData.imp_hosp_vmibeds()
      • ImportData.imp_hospitalized_deaths()
      • ImportData.imp_infected_accumulated()
      • ImportData.imp_infected_accumulated_mcyt()
      • ImportData.imp_infected_active()
      • ImportData.imp_infected_active_mcyt()
      • ImportData.imp_infected_daily()
      • ImportData.imp_infected_daily_mcyt()
      • ImportData.imp_infected_daily_mcyt_backprop()
      • ImportData.imp_infected_daily_national()
      • ImportData.imp_lockdowns()
      • ImportData.imp_pcr_population()
      • ImportData.imp_population()
      • ImportData.imp_population_mcyt()
      • ImportData.imp_reproduction_number()
      • ImportData.imp_sochimi()
      • ImportData.imp_sochimi_mcyt()
      • ImportData.imp_vacc_infected_mcyt()
      • ImportData.import_data()
      • ImportData.import_data_mcyt()
      • ImportData.import_data_seir()
      • ImportData.load()
      • ImportData.plot()
      • ImportData.save()
    • dataretriever()
    • dfappend()
    • help()
  • cv19gm.data.cv19data_national module
  • Module contents
• cv19gm.models package
  • Submodules
  • cv19gm.models.RBM_seir module
  • cv19gm.models.seir module
    • SEIR
      • SEIR.analytics()
      • SEIR.df_build()
      • SEIR.integrate()
      • SEIR.run()
      • SEIR.set_equations()
      • SEIR.set_initial_values()
      • SEIR.solve()
      • SEIR.solver_equations()
  • cv19gm.models.seir_meta module
    • SEIRMETA
      • SEIRMETA.global_results_build()
      • SEIRMETA.params_df_build()
      • SEIRMETA.results_build()
      • SEIRMETA.run()
      • SEIRMETA.set_equations()
      • SEIRMETA.set_initial_values()
      • SEIRMETA.solve()
      • SEIRMETA.solver_equations()
  • cv19gm.models.seir_nb module
  • cv19gm.models.seirhvd module
    • SEIRHVD
      • SEIRHVD.analytics()
      • SEIRHVD.df_build()
      • SEIRHVD.run()
      • SEIRHVD.set_equations()
      • SEIRHVD.set_initial_values()
      • SEIRHVD.solve()
      • SEIRHVD.solver_equations()
      • SEIRHVD.underreport()
  • cv19gm.models.seirtq module
    • SEIRTQ
      • SEIRTQ.analytics()
      • SEIRTQ.df_build()
      • SEIRTQ.model_equations()
      • SEIRTQ.run()
      • SEIRTQ.set_equations()
      • SEIRTQ.set_initial_values()
      • SEIRTQ.solve()
  • cv19gm.models.seirtqm module
  • cv19gm.models.sir module
    • SIR
      • SIR.analytics()
      • SIR.df_build()
      • SIR.run()
      • SIR.set_equations()
      • SIR.set_initial_values()
      • SIR.solve()
      • SIR.solver_equations()
  • Module contents
• cv19gm.utils package
  • Submodules
  • cv19gm.utils.cv19errors module
    • ITWE()
    • ITWE_log()
    • LAE()
    • LCE()
    • LRAE()
    • LRCE()
    • MSE()
    • RMSE()
    • RRMSE()
    • cv19errorbuild()
  • cv19gm.utils.cv19files module
    • getdefault()
    • load_default()
    • loadconfig()
    • saveconfig()
    • savedata()
    • unwrapconfig()
  • cv19gm.utils.cv19functions module
    • build()
    • build_add()
    • build_metapopulation()
    • data_function()
    • events()
    • events_append()
    • func_add()
    • interpolate_data()
    • linear_transition()
    • piecewise()
    • polyfit()
    • quadratic_transition()
    • saturation()
    • sawtooth()
    • sigmoidal_transition()
    • sine()
    • square()
    • transition()
  • cv19gm.utils.cv19mobility module
    • create_dynamic_mobility()
    • create_mobility_matrix()
    • create_random_distances_matrix()
    • export_mobility_dynamic()
    • export_mobility_matrix()
    • gravity_model()
    • import_mobility()
    • mobility_to_tensor()
    • mobility_transposed()
    • piecewise_linear_mobility_pattern()
    • radiation_model()
    • random_mobility_model()
    • rush_hour_mobility_pattern()
    • sinusoidal_mobility_pattern()
    • symmetric_mobility_pattern()
  • cv19gm.utils.cv19paramfit module
    • BETAMU_FIT
      • BETAMU_FIT.fitness()
      • BETAMU_FIT.get_bounds()
      • BETAMU_FIT.gradient()
      • BETAMU_FIT.set_bounds()
    • BETA_FIT
      • BETA_FIT.fitness()
      • BETA_FIT.get_bounds()
      • BETA_FIT.gradient()
      • BETA_FIT.set_bounds()
    • BETA_PIECEWISE_FIT
      • BETA_PIECEWISE_FIT.fitness()
      • BETA_PIECEWISE_FIT.get_bounds()
      • BETA_PIECEWISE_FIT.gradient()
      • BETA_PIECEWISE_FIT.set_bounds()
    • CV19PARAMFIT
      • CV19PARAMFIT.evolve()
      • CV19PARAMFIT.plot()
      • CV19PARAMFIT.plot_history()
      • CV19PARAMFIT.simulate()
    • INTERVAL_FIT
      • INTERVAL_FIT.fitness()
      • INTERVAL_FIT.get_bounds()
      • INTERVAL_FIT.set_bounds()
    • SEQUENTIAL_FIT
      • SEQUENTIAL_FIT.beta_fit()
      • SEQUENTIAL_FIT.betamu_fit()
      • SEQUENTIAL_FIT.optimize()
      • SEQUENTIAL_FIT.plot()
      • SEQUENTIAL_FIT.plot_history()
      • SEQUENTIAL_FIT.plot_step()
    • beta_fit()
    • data_management()
    • tendency_change()
  • cv19gm.utils.cv19timeutils module
    • JS2Datetime()
    • timeJStoPy()
    • txt2Datetime()
  • cv19gm.utils.reproduction_number module
  • Module contents

Submodules

cv19gm.cv19sim module

cv19gm.cv19sim.CV19SIM(config=None, compartmentalmodel=None, verbose=False, **kwargs)

Module contents