Index

A

add_data() (cv19gm.data.cv19data.ImportData method) analytics() (cv19gm.models.seir.SEIR method) (cv19gm.models.seirhvd.SEIRHVD method) (cv19gm.models.seirtq.SEIRTQ method) (cv19gm.models.sir.SIR method)

B

BETA_FIT (class in cv19gm.utils.cv19paramfit) beta_fit() (cv19gm.utils.cv19paramfit.SEQUENTIAL_FIT method) (in module cv19gm.utils.cv19paramfit) BETA_PIECEWISE_FIT (class in cv19gm.utils.cv19paramfit)

BETAMU_FIT (class in cv19gm.utils.cv19paramfit) betamu_fit() (cv19gm.utils.cv19paramfit.SEQUENTIAL_FIT method) build() (in module cv19gm.utils.cv19functions) build_add() (in module cv19gm.utils.cv19functions) build_metapopulation() (in module cv19gm.utils.cv19functions)

C

create_dynamic_mobility() (in module cv19gm.utils.cv19mobility) create_mobility_matrix() (in module cv19gm.utils.cv19mobility) create_random_distances_matrix() (in module cv19gm.utils.cv19mobility) cv19errorbuild() (in module cv19gm.utils.cv19errors) cv19gm module cv19gm.cv19sim module cv19gm.data module cv19gm.data.cv19data module cv19gm.models module cv19gm.models.seir module cv19gm.models.seir_meta module cv19gm.models.seirhvd module

cv19gm.models.seirtq module cv19gm.models.sir module cv19gm.utils module cv19gm.utils.cv19errors module cv19gm.utils.cv19files module cv19gm.utils.cv19functions module cv19gm.utils.cv19mobility module cv19gm.utils.cv19paramfit module cv19gm.utils.cv19timeutils module CV19PARAMFIT (class in cv19gm.utils.cv19paramfit) CV19SIM() (in module cv19gm.cv19sim)

D

data_function() (in module cv19gm.utils.cv19functions) data_management() (in module cv19gm.utils.cv19paramfit) dataretriever() (in module cv19gm.data.cv19data) df_build() (cv19gm.models.seir.SEIR method) (cv19gm.models.seirhvd.SEIRHVD method) (cv19gm.models.seirtq.SEIRTQ method) (cv19gm.models.sir.SIR method)

dfappend() (in module cv19gm.data.cv19data)

E

events() (in module cv19gm.utils.cv19functions) events_append() (in module cv19gm.utils.cv19functions)

evolve() (cv19gm.utils.cv19paramfit.CV19PARAMFIT method) export_mobility_dynamic() (in module cv19gm.utils.cv19mobility) export_mobility_matrix() (in module cv19gm.utils.cv19mobility)

F

fitness() (cv19gm.utils.cv19paramfit.BETA_FIT method) (cv19gm.utils.cv19paramfit.BETA_PIECEWISE_FIT method) (cv19gm.utils.cv19paramfit.BETAMU_FIT method) (cv19gm.utils.cv19paramfit.INTERVAL_FIT method)

func_add() (in module cv19gm.utils.cv19functions)

G

get_bounds() (cv19gm.utils.cv19paramfit.BETA_FIT method) (cv19gm.utils.cv19paramfit.BETA_PIECEWISE_FIT method) (cv19gm.utils.cv19paramfit.BETAMU_FIT method) (cv19gm.utils.cv19paramfit.INTERVAL_FIT method) getdefault() (in module cv19gm.utils.cv19files)

global_results_build() (cv19gm.models.seir_meta.SEIRMETA method) gradient() (cv19gm.utils.cv19paramfit.BETA_FIT method) (cv19gm.utils.cv19paramfit.BETA_PIECEWISE_FIT method) (cv19gm.utils.cv19paramfit.BETAMU_FIT method) gravity_model() (in module cv19gm.utils.cv19mobility)

H

help() (in module cv19gm.data.cv19data)

I

imp_adj_matrix_national() (cv19gm.data.cv19data.ImportData method) imp_adj_matrix_regional() (cv19gm.data.cv19data.ImportData method) imp_deaths_accumulated() (cv19gm.data.cv19data.ImportData method) imp_deaths_deis() (cv19gm.data.cv19data.ImportData method) imp_deaths_deis_mcyt() (cv19gm.data.cv19data.ImportData method) imp_deaths_excess() (cv19gm.data.cv19data.ImportData method) imp_hosp_icu() (cv19gm.data.cv19data.ImportData method) imp_hosp_icu_mcyt() (cv19gm.data.cv19data.ImportData method) imp_hosp_vmibeds() (cv19gm.data.cv19data.ImportData method) imp_hospitalized_deaths() (cv19gm.data.cv19data.ImportData method) imp_infected_accumulated() (cv19gm.data.cv19data.ImportData method) imp_infected_accumulated_mcyt() (cv19gm.data.cv19data.ImportData method) imp_infected_active() (cv19gm.data.cv19data.ImportData method) imp_infected_active_mcyt() (cv19gm.data.cv19data.ImportData method) imp_infected_daily() (cv19gm.data.cv19data.ImportData method) imp_infected_daily_mcyt() (cv19gm.data.cv19data.ImportData method) imp_infected_daily_mcyt_backprop() (cv19gm.data.cv19data.ImportData method) imp_infected_daily_national() (cv19gm.data.cv19data.ImportData method)

imp_lockdowns() (cv19gm.data.cv19data.ImportData method) imp_pcr_population() (cv19gm.data.cv19data.ImportData method) imp_population() (cv19gm.data.cv19data.ImportData method) imp_population_mcyt() (cv19gm.data.cv19data.ImportData method) imp_reproduction_number() (cv19gm.data.cv19data.ImportData method) imp_sochimi() (cv19gm.data.cv19data.ImportData method) imp_sochimi_mcyt() (cv19gm.data.cv19data.ImportData method) imp_vacc_infected_mcyt() (cv19gm.data.cv19data.ImportData method) import_data() (cv19gm.data.cv19data.ImportData method) import_data_mcyt() (cv19gm.data.cv19data.ImportData method) import_data_seir() (cv19gm.data.cv19data.ImportData method) import_mobility() (in module cv19gm.utils.cv19mobility) ImportData (class in cv19gm.data.cv19data) integrate() (cv19gm.models.seir.SEIR method) interpolate_data() (in module cv19gm.utils.cv19functions) INTERVAL_FIT (class in cv19gm.utils.cv19paramfit) ITWE() (in module cv19gm.utils.cv19errors) ITWE_log() (in module cv19gm.utils.cv19errors)

J

JS2Datetime() (in module cv19gm.utils.cv19timeutils)

L

LAE() (in module cv19gm.utils.cv19errors) LCE() (in module cv19gm.utils.cv19errors) linear_transition() (in module cv19gm.utils.cv19functions) load() (cv19gm.data.cv19data.ImportData method)

load_default() (in module cv19gm.utils.cv19files) loadconfig() (in module cv19gm.utils.cv19files) LRAE() (in module cv19gm.utils.cv19errors) LRCE() (in module cv19gm.utils.cv19errors)

M

mobility_to_tensor() (in module cv19gm.utils.cv19mobility) mobility_transposed() (in module cv19gm.utils.cv19mobility) model_equations() (cv19gm.models.seirtq.SEIRTQ method) module cv19gm cv19gm.cv19sim cv19gm.data cv19gm.data.cv19data cv19gm.models cv19gm.models.seir cv19gm.models.seir_meta cv19gm.models.seirhvd cv19gm.models.seirtq cv19gm.models.sir cv19gm.utils cv19gm.utils.cv19errors cv19gm.utils.cv19files cv19gm.utils.cv19functions cv19gm.utils.cv19mobility cv19gm.utils.cv19paramfit cv19gm.utils.cv19timeutils

MSE() (in module cv19gm.utils.cv19errors)

O

optimize() (cv19gm.utils.cv19paramfit.SEQUENTIAL_FIT method)

P

params_df_build() (cv19gm.models.seir_meta.SEIRMETA method) piecewise() (in module cv19gm.utils.cv19functions) piecewise_linear_mobility_pattern() (in module cv19gm.utils.cv19mobility) plot() (cv19gm.data.cv19data.ImportData method) (cv19gm.utils.cv19paramfit.CV19PARAMFIT method) (cv19gm.utils.cv19paramfit.SEQUENTIAL_FIT method)

plot_history() (cv19gm.utils.cv19paramfit.CV19PARAMFIT method) (cv19gm.utils.cv19paramfit.SEQUENTIAL_FIT method) plot_step() (cv19gm.utils.cv19paramfit.SEQUENTIAL_FIT method) polyfit() (in module cv19gm.utils.cv19functions)

Q

quadratic_transition() (in module cv19gm.utils.cv19functions)

R

radiation_model() (in module cv19gm.utils.cv19mobility) random_mobility_model() (in module cv19gm.utils.cv19mobility) results_build() (cv19gm.models.seir_meta.SEIRMETA method) RMSE() (in module cv19gm.utils.cv19errors) RRMSE() (in module cv19gm.utils.cv19errors)

run() (cv19gm.models.seir.SEIR method) (cv19gm.models.seir_meta.SEIRMETA method) (cv19gm.models.seirhvd.SEIRHVD method) (cv19gm.models.seirtq.SEIRTQ method) (cv19gm.models.sir.SIR method) rush_hour_mobility_pattern() (in module cv19gm.utils.cv19mobility)

S

saturation() (in module cv19gm.utils.cv19functions) save() (cv19gm.data.cv19data.ImportData method) saveconfig() (in module cv19gm.utils.cv19files) savedata() (in module cv19gm.utils.cv19files) sawtooth() (in module cv19gm.utils.cv19functions) SEIR (class in cv19gm.models.seir) SEIRHVD (class in cv19gm.models.seirhvd) SEIRMETA (class in cv19gm.models.seir_meta) SEIRTQ (class in cv19gm.models.seirtq) SEQUENTIAL_FIT (class in cv19gm.utils.cv19paramfit) set_bounds() (cv19gm.utils.cv19paramfit.BETA_FIT method) (cv19gm.utils.cv19paramfit.BETA_PIECEWISE_FIT method) (cv19gm.utils.cv19paramfit.BETAMU_FIT method) (cv19gm.utils.cv19paramfit.INTERVAL_FIT method) set_equations() (cv19gm.models.seir.SEIR method) (cv19gm.models.seir_meta.SEIRMETA method) (cv19gm.models.seirhvd.SEIRHVD method) (cv19gm.models.seirtq.SEIRTQ method) (cv19gm.models.sir.SIR method) set_initial_values() (cv19gm.models.seir.SEIR method) (cv19gm.models.seir_meta.SEIRMETA method) (cv19gm.models.seirhvd.SEIRHVD method) (cv19gm.models.seirtq.SEIRTQ method) (cv19gm.models.sir.SIR method)

sigmoidal_transition() (in module cv19gm.utils.cv19functions) simulate() (cv19gm.utils.cv19paramfit.CV19PARAMFIT method) sine() (in module cv19gm.utils.cv19functions) sinusoidal_mobility_pattern() (in module cv19gm.utils.cv19mobility) SIR (class in cv19gm.models.sir) solve() (cv19gm.models.seir.SEIR method) (cv19gm.models.seir_meta.SEIRMETA method) (cv19gm.models.seirhvd.SEIRHVD method) (cv19gm.models.seirtq.SEIRTQ method) (cv19gm.models.sir.SIR method) solver_equations() (cv19gm.models.seir.SEIR method) (cv19gm.models.seir_meta.SEIRMETA method) (cv19gm.models.seirhvd.SEIRHVD method) (cv19gm.models.sir.SIR method) square() (in module cv19gm.utils.cv19functions) symmetric_mobility_pattern() (in module cv19gm.utils.cv19mobility)

T

tendency_change() (in module cv19gm.utils.cv19paramfit) timeJStoPy() (in module cv19gm.utils.cv19timeutils)

transition() (in module cv19gm.utils.cv19functions) txt2Datetime() (in module cv19gm.utils.cv19timeutils)

U

underreport() (cv19gm.models.seirhvd.SEIRHVD method)

unwrapconfig() (in module cv19gm.utils.cv19files)